Variant report

Variant	rs1920190
Chromosome Location	chr3:116120738-116120739
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:116116203..116118718-chr3:116119637..116121957,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10212559	0.85[JPT][hapmap]
rs1073924	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10804523	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12488406	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12492517	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13069948	0.86[JPT][hapmap]
rs13070962	0.86[JPT][hapmap]
rs1367772	0.95[CEU][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs1623237	0.90[CEU][hapmap]
rs1731607	0.90[CEU][hapmap]
rs1920184	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1920186	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1920191	0.80[CEU][hapmap]
rs2033406	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4831096	0.86[JPT][hapmap]
rs4831130	0.80[CEU][hapmap]
rs4831131	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4831133	0.86[JPT][hapmap]
rs4831134	0.86[JPT][hapmap]
rs4831136	0.86[JPT][hapmap]
rs6786250	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7637573	0.86[JPT][hapmap]
rs7652923	0.86[JPT][hapmap]
rs9289050	0.86[JPT][hapmap]
rs9289051	0.86[JPT][hapmap]
rs9822445	0.95[CEU][hapmap]
rs9823782	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9838534	0.86[JPT][hapmap]
rs9869410	0.95[CEU][hapmap]
rs9870357	0.82[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.96[CHD][hapmap];0.91[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.87[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757005	chr3:116085678-116121948	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv2759170	chr3:116085678-116121948	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116103000-116142000	Weak transcription	Fetal Lung	lung
2	chr3:116112600-116132800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:116113800-116127600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:116117600-116124000	Weak transcription	Brain Germinal Matrix	brain
5	chr3:116118600-116128800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:116118800-116123800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:116119000-116123800	Weak transcription	Brain Substantia Nigra	brain
8	chr3:116119200-116123800	Weak transcription	Brain Anterior Caudate	brain
9	chr3:116119800-116133600	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:116120200-116121600	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:116120400-116126000	Weak transcription	Brain Angular Gyrus	brain

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