Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13079395	0.82[JPT][hapmap]
rs1541871	0.91[YRI][hapmap]
rs1619655	0.86[YRI][hapmap]
rs17647031	0.82[JPT][hapmap]
rs17703257	0.82[JPT][hapmap]
rs1920184	0.80[CEU][hapmap]
rs1920185	0.85[YRI][hapmap]
rs1920190	0.80[CEU][hapmap]
rs2033406	0.92[JPT][hapmap]
rs2163504	0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs4831130	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4831131	0.92[JPT][hapmap]
rs6785974	0.86[YRI][hapmap]
rs6810089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs724115	0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs7627104	0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs7648197	0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs9823782	0.80[CEU][hapmap];0.92[JPT][hapmap]
rs9845707	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs9856796	0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs9870357	0.80[CEU][hapmap];0.92[JPT][hapmap]
rs988803	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116038400-116048400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:116041800-116045600	Weak transcription	Colon Smooth Muscle	Colon

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