Variant report

Variant	rs17647031
Chromosome Location	chr3:116102745-116102746
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1030577	0.90[JPT][hapmap]
rs11924642	0.90[JPT][hapmap]
rs11928524	0.90[JPT][hapmap]
rs13069010	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13069169	0.93[ASN][1000 genomes]
rs13073414	0.90[JPT][hapmap]
rs13075678	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13075875	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13077535	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13079395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13092244	0.81[MEX][hapmap]
rs13098368	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13100341	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13323946	0.90[JPT][hapmap]
rs1367770	0.90[JPT][hapmap]
rs1583182	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16824787	0.90[JPT][hapmap]
rs17645807	0.85[TSI][hapmap]
rs17646621	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17647091	0.90[JPT][hapmap]
rs17703257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1920191	0.82[JPT][hapmap]
rs2867100	0.90[JPT][hapmap]
rs34126529	0.93[ASN][1000 genomes]
rs34584395	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34663845	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35841859	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4831094	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4831132	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4831139	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6438315	0.90[JPT][hapmap]
rs67178951	1.00[ASN][1000 genomes]
rs6786130	0.90[JPT][hapmap]
rs6810089	0.82[JPT][hapmap]
rs7634137	0.90[JPT][hapmap]
rs960082	0.85[TSI][hapmap]
rs9861474	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv437338	chr3:116076289-116110635	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2757005	chr3:116085678-116121948	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2759170	chr3:116085678-116121948	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1014989	chr3:116096198-116109192	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1003543	chr3:116096198-116111430	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3463484	chr3:116098674-116110408	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3463485	chr3:116098674-116110408	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv21066	chr3:116098946-116109977	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv516570	chr3:116099041-116108165	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1011591	chr3:116099041-116109192	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17647031	ADORA2A	trans	brain	seeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116096400-116108000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:116102000-116102800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:116102200-116104200	Enhancers	Brain Substantia Nigra	brain
4	chr3:116102600-116103000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr3:116102600-116103000	Enhancers	Fetal Lung	lung
6	chr3:116102600-116103200	Enhancers	Rectal Smooth Muscle	rectum
7	chr3:116102600-116103600	Enhancers	Brain Hippocampus Middle	brain
8	chr3:116102600-116103800	Enhancers	Brain Germinal Matrix	brain
9	chr3:116102600-116104400	Enhancers	Brain Anterior Caudate	brain

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