Variant report

Variant	rs34663845
Chromosome Location	chr3:116059450-116059451
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13069010	0.88[EUR][1000 genomes]
rs13069169	0.88[ASN][1000 genomes]
rs13075678	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13075875	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13077535	0.92[EUR][1000 genomes]
rs13079395	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13098368	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13100341	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1583182	0.90[EUR][1000 genomes]
rs17646621	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17647031	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17703257	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34126529	0.88[ASN][1000 genomes]
rs34584395	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35841859	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4831094	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4831132	0.92[EUR][1000 genomes]
rs4831139	0.86[EUR][1000 genomes]
rs67178951	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116052200-116060600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:116056600-116062400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:116056800-116060200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:116056800-116064000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr3:116057000-116062000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:116057200-116061400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr3:116057600-116061400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr3:116058200-116060000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:116058200-116060800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:116058600-116060600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:116058800-116060400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr3:116058800-116069000	Weak transcription	Brain Angular Gyrus	brain
13	chr3:116059000-116060000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:116059000-116060200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:116059000-116060400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:116059000-116060400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr3:116059000-116060600	Weak transcription	Brain Anterior Caudate	brain
18	chr3:116059000-116060600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr3:116059000-116060600	Weak transcription	Brain Hippocampus Middle	brain
20	chr3:116059000-116060800	Weak transcription	Brain Substantia Nigra	brain
21	chr3:116059000-116061600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr3:116059000-116062800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr3:116059200-116060400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr3:116059200-116060600	Weak transcription	Colon Smooth Muscle	Colon
25	chr3:116059400-116059800	Enhancers	NHDF-Ad	bronchial

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