Variant report

Variant	rs4831139
Chromosome Location	chr3:116128405-116128406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10212559	0.92[JPT][hapmap]
rs13069010	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13069948	0.92[JPT][hapmap]
rs13070962	0.92[JPT][hapmap]
rs13075678	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13075875	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13077535	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13079395	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13092244	0.82[CHD][hapmap]
rs13098368	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13100341	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1583182	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1731596	0.84[JPT][hapmap]
rs17645807	0.85[TSI][hapmap]
rs17646621	0.88[EUR][1000 genomes]
rs17647031	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17703257	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34584395	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34663845	0.86[EUR][1000 genomes]
rs35841859	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4831094	0.88[EUR][1000 genomes]
rs4831096	0.92[JPT][hapmap]
rs4831132	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4831133	0.92[JPT][hapmap]
rs4831134	0.92[JPT][hapmap]
rs4831136	0.92[JPT][hapmap]
rs67178951	0.84[ASN][1000 genomes]
rs7637573	0.92[JPT][hapmap]
rs7652923	0.92[JPT][hapmap]
rs9289050	0.92[JPT][hapmap]
rs9289051	0.92[JPT][hapmap]
rs960082	0.85[TSI][hapmap]
rs9838534	0.92[JPT][hapmap]
rs9860260	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116103000-116142000	Weak transcription	Fetal Lung	lung
2	chr3:116112600-116132800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:116118600-116128800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:116119800-116133600	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:116124400-116129200	Weak transcription	Brain Anterior Caudate	brain
6	chr3:116124600-116133600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:116125200-116128800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr3:116126600-116128800	Weak transcription	Brain Angular Gyrus	brain
9	chr3:116127600-116129000	Enhancers	Brain Substantia Nigra	brain
10	chr3:116128000-116128800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr3:116128200-116128600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:116128400-116128800	Weak transcription	Colon Smooth Muscle	Colon

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