Variant report

Variant	rs13075678
Chromosome Location	chr3:116119143-116119144
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10212559	0.91[JPT][hapmap]
rs13069010	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13069948	0.92[JPT][hapmap]
rs13070962	0.92[JPT][hapmap]
rs13075875	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13077535	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13079395	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13098368	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13100341	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1583182	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1731596	0.83[JPT][hapmap]
rs17646621	0.92[EUR][1000 genomes]
rs17647031	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17703257	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34584395	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34663845	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35061171	0.89[AFR][1000 genomes]
rs35841859	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4831094	0.92[EUR][1000 genomes]
rs4831096	0.92[JPT][hapmap]
rs4831132	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4831133	0.92[JPT][hapmap]
rs4831134	0.92[JPT][hapmap]
rs4831136	0.92[JPT][hapmap]
rs4831139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67178951	0.84[ASN][1000 genomes]
rs7637573	0.92[JPT][hapmap]
rs7652923	0.92[JPT][hapmap]
rs9289050	0.92[JPT][hapmap]
rs9289051	0.92[JPT][hapmap]
rs9838534	0.92[JPT][hapmap]
rs9860260	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757005	chr3:116085678-116121948	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv2759170	chr3:116085678-116121948	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116103000-116142000	Weak transcription	Fetal Lung	lung
2	chr3:116112600-116132800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:116113800-116127600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:116115200-116119200	Enhancers	Brain Anterior Caudate	brain
5	chr3:116117000-116120400	Enhancers	Brain Angular Gyrus	brain
6	chr3:116117200-116119800	Enhancers	Brain Hippocampus Middle	brain
7	chr3:116117600-116124000	Weak transcription	Brain Germinal Matrix	brain
8	chr3:116118200-116119600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:116118600-116120200	Enhancers	Colon Smooth Muscle	Colon
10	chr3:116118600-116128800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr3:116118800-116123800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:116119000-116123800	Weak transcription	Brain Substantia Nigra	brain

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