Variant report

Variant	rs13098368
Chromosome Location	chr3:116107276-116107277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13069010	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13069169	0.93[ASN][1000 genomes]
rs13075678	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13075875	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13077535	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13079395	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13100341	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1583182	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17646621	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17647031	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17703257	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34126529	0.93[ASN][1000 genomes]
rs34584395	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34663845	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35841859	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4831094	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4831132	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4831139	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67178951	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv437338	chr3:116076289-116110635	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2757005	chr3:116085678-116121948	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2759170	chr3:116085678-116121948	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1014989	chr3:116096198-116109192	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1003543	chr3:116096198-116111430	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3463484	chr3:116098674-116110408	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3463485	chr3:116098674-116110408	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv21066	chr3:116098946-116109977	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv516570	chr3:116099041-116108165	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1011591	chr3:116099041-116109192	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116096400-116108000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:116103000-116107400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:116103000-116107400	Weak transcription	Fetal Brain Male	brain
4	chr3:116103000-116142000	Weak transcription	Fetal Lung	lung
5	chr3:116103800-116107400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:116103800-116107600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr3:116103800-116107600	Weak transcription	Brain Angular Gyrus	brain
8	chr3:116103800-116110600	Weak transcription	Brain Germinal Matrix	brain
9	chr3:116104200-116107400	Weak transcription	Colon Smooth Muscle	Colon
10	chr3:116104200-116107600	Weak transcription	Brain Substantia Nigra	brain
11	chr3:116104400-116107600	Weak transcription	Brain Anterior Caudate	brain
12	chr3:116104400-116107600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:116105000-116110200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:116107000-116108200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr3:116107000-116108600	Enhancers	Brain Cingulate Gyrus	brain
16	chr3:116107000-116109000	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr3:116107000-116109600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr3:116107200-116108600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr3:116107200-116108600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr3:116107200-116108600	Enhancers	Brain Hippocampus Middle	brain
21	chr3:116107200-116109800	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr3:116107200-116109800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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