Variant report

Variant	rs13069169
Chromosome Location	chr3:116039000-116039001
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs13066016	0.84[EUR][1000 genomes]
rs13079395	0.93[ASN][1000 genomes]
rs13083485	0.81[EUR][1000 genomes]
rs13084538	0.84[EUR][1000 genomes]
rs13089283	0.84[EUR][1000 genomes]
rs13089698	0.84[EUR][1000 genomes]
rs13090417	0.81[EUR][1000 genomes]
rs13098368	0.93[ASN][1000 genomes]
rs13100898	0.81[EUR][1000 genomes]
rs1346944	0.81[EUR][1000 genomes]
rs16824766	0.84[EUR][1000 genomes]
rs17645807	0.84[EUR][1000 genomes]
rs17646621	0.86[ASN][1000 genomes]
rs17647031	0.93[ASN][1000 genomes]
rs17702560	0.84[EUR][1000 genomes]
rs17702806	0.84[EUR][1000 genomes]
rs17703257	0.93[ASN][1000 genomes]
rs34126529	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34279063	0.81[EUR][1000 genomes]
rs34408946	0.89[EUR][1000 genomes]
rs34584395	0.93[ASN][1000 genomes]
rs34663845	0.88[ASN][1000 genomes]
rs34905742	0.89[EUR][1000 genomes]
rs35538266	0.81[EUR][1000 genomes]
rs35841859	0.91[ASN][1000 genomes]
rs35966018	0.81[EUR][1000 genomes]
rs4831094	0.83[ASN][1000 genomes]
rs67178951	0.93[ASN][1000 genomes]
rs71323438	0.81[EUR][1000 genomes]
rs960082	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116032600-116040000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr3:116036200-116041400	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:116037600-116039000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:116038400-116048400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:116038600-116041000	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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