Variant report

Variant	rs17702806
Chromosome Location	chr3:116034964-116034965
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13066016	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13069169	0.84[EUR][1000 genomes]
rs13083485	0.97[EUR][1000 genomes]
rs13084538	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13089283	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13089698	1.00[EUR][1000 genomes]
rs13090417	0.97[EUR][1000 genomes]
rs13100898	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1346944	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs16824766	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17645807	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17702560	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34126529	0.88[EUR][1000 genomes]
rs34279063	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34408946	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34905742	0.94[EUR][1000 genomes]
rs35538266	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35966018	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71323438	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71323439	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs960082	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116019600-116037000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:116026200-116037200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:116028200-116037400	Weak transcription	Brain Germinal Matrix	brain
4	chr3:116032400-116037200	Weak transcription	Brain Angular Gyrus	brain
5	chr3:116032400-116038200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:116032600-116037200	Weak transcription	Brain Substantia Nigra	brain
7	chr3:116032600-116040000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:116033400-116036200	Enhancers	Colon Smooth Muscle	Colon
9	chr3:116034000-116035000	Enhancers	K562	blood
10	chr3:116034000-116035800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:116034200-116037200	Weak transcription	Brain Hippocampus Middle	brain
12	chr3:116034200-116037600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:116034200-116038000	Weak transcription	Brain Anterior Caudate	brain
14	chr3:116034400-116037000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:116034400-116038000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr3:116034600-116037200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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