Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13066016	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13083485	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13084538	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13089283	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13089698	0.92[EUR][1000 genomes]
rs13090417	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13100898	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1346944	0.89[EUR][1000 genomes]
rs16824766	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17645807	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17702560	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17702806	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34126529	0.81[EUR][1000 genomes]
rs34279063	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34408946	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34905742	0.86[EUR][1000 genomes]
rs35538266	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35966018	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71323438	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs960082	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv3957	chr3:115986950-116032625	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115997200-116017200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:115999400-116014000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:116007400-116014400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:116007600-116013600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:116007600-116014200	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:116007600-116014400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:116007600-116016800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:116007800-116014200	Weak transcription	Brain Substantia Nigra	brain
9	chr3:116009000-116014200	Weak transcription	Colon Smooth Muscle	Colon
10	chr3:116009000-116018600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:116009200-116018200	Weak transcription	Brain Germinal Matrix	brain
12	chr3:116010000-116012800	Weak transcription	Fetal Lung	lung

Quick Search: