Variant report

Variant	rs13079395
Chromosome Location	chr3:116045860-116045861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1030577	0.90[JPT][hapmap]
rs11924642	0.90[JPT][hapmap]
rs11928524	0.90[JPT][hapmap]
rs13069010	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13069169	0.93[ASN][1000 genomes]
rs13073414	0.90[JPT][hapmap]
rs13075678	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13075875	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13077535	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13098368	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13100341	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13323946	0.90[JPT][hapmap]
rs1367770	0.90[JPT][hapmap]
rs1583182	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16824787	0.90[JPT][hapmap]
rs17645807	0.85[TSI][hapmap]
rs17646621	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17647031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17647091	0.90[JPT][hapmap]
rs17703257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1920191	0.82[JPT][hapmap]
rs2867100	0.90[JPT][hapmap]
rs34126529	0.93[ASN][1000 genomes]
rs34584395	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34663845	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35841859	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4831094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4831132	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4831139	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6438315	0.90[JPT][hapmap]
rs67178951	1.00[ASN][1000 genomes]
rs6786130	0.90[JPT][hapmap]
rs6810089	0.82[JPT][hapmap]
rs7634137	0.90[JPT][hapmap]
rs960082	0.85[TSI][hapmap]
rs9861474	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116038400-116048400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:116045600-116046200	Enhancers	Colon Smooth Muscle	Colon

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