Variant report

Variant	rs13073414
Chromosome Location	chr3:116075315-116075316
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:116075159-116075359	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:116068430..116070631-chr3:116074599..116076825,2	K562	blood:

Variant related genes	Relation type
LSAMP-AS1	TF binding region

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10212415	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10212559	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1030577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11924642	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11928524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12695326	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13068349	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13069948	1.00[CEU][hapmap];0.88[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13070962	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13077694	0.85[ASN][1000 genomes]
rs13079395	0.90[JPT][hapmap]
rs13088599	0.96[ASN][1000 genomes]
rs13323946	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1367770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1583183	0.86[ASN][1000 genomes]
rs16824787	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1731596	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17647031	0.90[JPT][hapmap]
rs17647091	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs17703257	0.90[JPT][hapmap]
rs1920183	0.84[ASN][1000 genomes]
rs2033406	0.83[JPT][hapmap]
rs2867100	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34642483	1.00[ASN][1000 genomes]
rs35061171	0.84[ASN][1000 genomes]
rs4271908	0.92[ASN][1000 genomes]
rs4831096	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4831131	0.83[JPT][hapmap]
rs4831133	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs4831134	0.89[CHB][hapmap];0.86[ASN][1000 genomes]
rs4831136	0.88[CEU][hapmap];0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs4831138	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6438315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6775240	0.96[ASN][1000 genomes]
rs6786130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71323440	1.00[ASN][1000 genomes]
rs71625206	0.83[ASN][1000 genomes]
rs7619907	0.86[ASN][1000 genomes]
rs7629472	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7630011	0.86[ASN][1000 genomes]
rs7634137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7637573	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7652554	0.86[ASN][1000 genomes]
rs7652923	0.88[CEU][hapmap];0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs9289050	0.88[CEU][hapmap];0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs9289051	0.89[CHB][hapmap];0.85[ASN][1000 genomes]
rs9823016	0.90[ASN][1000 genomes]
rs9823782	0.83[JPT][hapmap]
rs9827984	0.86[ASN][1000 genomes]
rs9833356	0.99[ASN][1000 genomes]
rs9838534	1.00[CEU][hapmap];0.88[CHB][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9860105	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9860236	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9860260	0.89[CHB][hapmap];0.87[ASN][1000 genomes]
rs9861474	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9870357	0.83[JPT][hapmap]
rs9989972	0.85[ASN][1000 genomes]
rs9990359	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links