Variant report

Variant	rs35061171
Chromosome Location	chr3:116135629-116135630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:116135316..116137426-chr3:116138160..116140553,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10212415	0.99[ASN][1000 genomes]
rs10212559	0.99[ASN][1000 genomes]
rs1030577	0.84[ASN][1000 genomes]
rs11924642	0.85[ASN][1000 genomes]
rs11928524	0.85[ASN][1000 genomes]
rs12695326	0.85[ASN][1000 genomes]
rs13068349	0.82[ASN][1000 genomes]
rs13069948	0.99[ASN][1000 genomes]
rs13070962	0.99[ASN][1000 genomes]
rs13073414	0.84[ASN][1000 genomes]
rs13075678	0.89[AFR][1000 genomes]
rs13075875	0.88[AFR][1000 genomes]
rs13077694	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13088599	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13100341	0.91[AFR][1000 genomes]
rs13323946	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1367770	0.85[ASN][1000 genomes]
rs1583183	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1619451	0.82[ASN][1000 genomes]
rs1731596	1.00[ASN][1000 genomes]
rs17647091	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1920183	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34642483	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4271908	0.92[EUR][1000 genomes]
rs4831096	0.99[ASN][1000 genomes]
rs4831133	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4831134	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4831136	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4831138	0.99[ASN][1000 genomes]
rs6438315	0.85[ASN][1000 genomes]
rs6775240	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6786130	0.82[ASN][1000 genomes]
rs71323440	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71625206	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7619907	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7629472	0.97[ASN][1000 genomes]
rs7630011	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7634137	0.85[ASN][1000 genomes]
rs7637573	0.99[ASN][1000 genomes]
rs7652554	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7652923	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9289050	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9289051	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9823016	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9827984	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9833356	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9838534	0.97[ASN][1000 genomes]
rs9860105	0.91[ASN][1000 genomes]
rs9860236	0.96[ASN][1000 genomes]
rs9860260	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9861474	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9989972	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9990359	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116103000-116142000	Weak transcription	Fetal Lung	lung
2	chr3:116132400-116135800	Enhancers	Brain Cingulate Gyrus	brain
3	chr3:116132400-116136400	Enhancers	Brain Anterior Caudate	brain
4	chr3:116132400-116141800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:116133400-116136200	Enhancers	Brain Angular Gyrus	brain
6	chr3:116133400-116136200	Enhancers	Colon Smooth Muscle	Colon
7	chr3:116133600-116136200	Enhancers	Fetal Stomach	stomach
8	chr3:116133600-116136400	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr3:116134400-116142000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:116135000-116136000	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:116135000-116136600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:116135200-116136400	Enhancers	Brain Substantia Nigra	brain
13	chr3:116135600-116136200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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