Variant report

Variant	rs9860105
Chromosome Location	chr3:116110552-116110553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10212415	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10212559	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1030577	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11924642	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11928524	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12695326	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13068349	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13069948	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13070962	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13073414	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13077694	0.93[ASN][1000 genomes]
rs13088599	0.84[ASN][1000 genomes]
rs13323946	0.86[ASN][1000 genomes]
rs1367770	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1583183	0.94[ASN][1000 genomes]
rs1619451	0.81[ASN][1000 genomes]
rs1731596	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17647091	0.86[ASN][1000 genomes]
rs1920183	0.91[ASN][1000 genomes]
rs34642483	0.85[ASN][1000 genomes]
rs35061171	0.91[ASN][1000 genomes]
rs4831096	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4831133	0.94[ASN][1000 genomes]
rs4831134	0.94[ASN][1000 genomes]
rs4831136	0.93[ASN][1000 genomes]
rs4831138	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6438315	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6775240	0.81[ASN][1000 genomes]
rs6786130	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71323440	0.85[ASN][1000 genomes]
rs71625206	0.91[ASN][1000 genomes]
rs7619907	0.94[ASN][1000 genomes]
rs7629472	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7630011	0.94[ASN][1000 genomes]
rs7634137	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7637573	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7652554	0.94[ASN][1000 genomes]
rs7652923	0.94[ASN][1000 genomes]
rs9289050	0.93[ASN][1000 genomes]
rs9289051	0.93[ASN][1000 genomes]
rs9823016	0.90[ASN][1000 genomes]
rs9827984	0.94[ASN][1000 genomes]
rs9833356	0.86[ASN][1000 genomes]
rs9838534	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9860236	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9860260	0.95[ASN][1000 genomes]
rs9861474	0.86[ASN][1000 genomes]
rs9989972	0.93[ASN][1000 genomes]
rs9990359	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv437338	chr3:116076289-116110635	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2757005	chr3:116085678-116121948	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2759170	chr3:116085678-116121948	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1003543	chr3:116096198-116111430	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116103000-116142000	Weak transcription	Fetal Lung	lung
2	chr3:116103800-116110600	Weak transcription	Brain Germinal Matrix	brain
3	chr3:116108000-116113400	Weak transcription	Brain Angular Gyrus	brain
4	chr3:116108200-116110600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:116108200-116110600	Weak transcription	Fetal Stomach	stomach
6	chr3:116108200-116115200	Weak transcription	Brain Anterior Caudate	brain
7	chr3:116108400-116112800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:116108400-116113400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:116108400-116113600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr3:116108600-116110600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr3:116108600-116110800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:116108600-116113200	Weak transcription	Brain Substantia Nigra	brain
13	chr3:116108600-116113800	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:116108600-116114200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr3:116109200-116118600	Weak transcription	Colon Smooth Muscle	Colon
16	chr3:116109400-116110600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:116109600-116118400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr3:116110200-116110600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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