Variant report

Variant	rs13069948
Chromosome Location	chr3:116127397-116127398
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10212415	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10212559	1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1030577	1.00[CEU][hapmap];0.88[CHB][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10513826	0.86[CHD][hapmap]
rs11924642	0.83[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[CHD][hapmap];0.86[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11928524	0.83[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[CHD][hapmap];0.96[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12695326	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13068349	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13070962	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.96[TSI][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13073414	1.00[CEU][hapmap];0.88[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13075678	0.92[JPT][hapmap]
rs13077535	0.91[JPT][hapmap]
rs13077694	1.00[ASN][1000 genomes]
rs13088599	0.84[ASN][1000 genomes]
rs13323946	0.88[CEU][hapmap];0.88[CHB][hapmap];0.95[CHD][hapmap];0.86[ASN][1000 genomes]
rs1367770	0.83[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[CHD][hapmap];0.96[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1583183	0.99[ASN][1000 genomes]
rs1619451	0.81[ASN][1000 genomes]
rs16824787	0.88[CEU][hapmap];0.88[CHB][hapmap]
rs1731596	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.92[JPT][hapmap];0.86[MEX][hapmap];0.96[TSI][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17647091	0.86[CHB][hapmap];0.95[CHD][hapmap];0.84[MEX][hapmap];0.86[ASN][1000 genomes]
rs1920183	0.99[ASN][1000 genomes]
rs1920190	0.86[JPT][hapmap]
rs2867100	0.88[CEU][hapmap];0.88[CHB][hapmap]
rs34642483	0.85[ASN][1000 genomes]
rs35061171	0.99[ASN][1000 genomes]
rs41442746	0.86[CHD][hapmap]
rs4831096	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4831097	0.86[CHD][hapmap]
rs4831133	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.99[ASN][1000 genomes]
rs4831134	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4831136	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[ASN][1000 genomes]
rs4831138	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4831139	0.92[JPT][hapmap]
rs6438315	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6775240	0.81[ASN][1000 genomes]
rs6786130	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71323440	0.85[ASN][1000 genomes]
rs71625206	0.96[ASN][1000 genomes]
rs7619907	0.99[ASN][1000 genomes]
rs7629472	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7630011	0.99[ASN][1000 genomes]
rs7634137	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[CHD][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7637573	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.96[TSI][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7652554	0.99[ASN][1000 genomes]
rs7652923	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.99[ASN][1000 genomes]
rs9289050	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[ASN][1000 genomes]
rs9289051	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9823016	0.95[ASN][1000 genomes]
rs9827984	0.99[ASN][1000 genomes]
rs9833356	0.86[ASN][1000 genomes]
rs9838534	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.86[MEX][hapmap];0.96[TSI][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9857124	0.82[CHD][hapmap]
rs9860105	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9860236	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9860260	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs9861474	0.88[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];0.86[ASN][1000 genomes]
rs9989972	1.00[ASN][1000 genomes]
rs9990359	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116103000-116142000	Weak transcription	Fetal Lung	lung
2	chr3:116112600-116132800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:116113800-116127600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:116118600-116128800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr3:116119800-116133600	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:116124400-116129200	Weak transcription	Brain Anterior Caudate	brain
7	chr3:116124600-116133600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:116124800-116127600	Weak transcription	Brain Substantia Nigra	brain
9	chr3:116125200-116128800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:116126600-116128800	Weak transcription	Brain Angular Gyrus	brain
11	chr3:116127200-116128400	Enhancers	Colon Smooth Muscle	Colon

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