Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10513826	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13069948	0.82[CHD][hapmap]
rs13316464	0.90[CEU][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap]
rs1623237	0.82[JPT][hapmap]
rs16824908	0.89[CEU][hapmap];0.82[CHD][hapmap]
rs1731596	0.82[CHD][hapmap]
rs1920175	0.90[CEU][hapmap];0.80[JPT][hapmap]
rs41442746	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs4831097	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4831133	0.82[CHD][hapmap]
rs4831136	0.82[CHD][hapmap]
rs67644980	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767942	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6777473	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7637573	0.82[CHD][hapmap]
rs7638540	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7652923	0.80[CHD][hapmap]
rs9289050	0.82[CHD][hapmap]
rs9838534	0.81[CHD][hapmap]
rs9875727	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757886	chr3:116142130-116307542	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759171	chr3:116142130-116307542	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116143400-116161200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr3:116143600-116161000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:116144000-116155800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:116144200-116159000	Weak transcription	Brain Angular Gyrus	brain
5	chr3:116144200-116159000	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:116144200-116160400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:116144200-116160400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:116151400-116152000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:116151400-116152000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:116151600-116152000	Enhancers	NH-A	brain
11	chr3:116151600-116152400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr3:116151800-116152000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr3:116151800-116152000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr3:116151800-116153200	Enhancers	Colon Smooth Muscle	Colon

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