Variant report

Variant	rs13316464
Chromosome Location	chr3:116140574-116140575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10513826	0.90[CEU][hapmap];0.87[CHD][hapmap];0.92[GIH][hapmap]
rs13094055	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1619451	0.83[GIH][hapmap];0.82[JPT][hapmap];0.80[TSI][hapmap];0.82[EUR][1000 genomes]
rs16824908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.93[LWK][hapmap];0.89[MKK][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16824913	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1920175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1920197	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35192256	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35220064	0.83[EUR][1000 genomes]
rs41442746	0.90[CEU][hapmap];0.87[CHD][hapmap];0.96[GIH][hapmap];0.82[JPT][hapmap]
rs4831097	0.90[CEU][hapmap];0.87[CHD][hapmap];0.96[GIH][hapmap];0.82[JPT][hapmap];0.85[MEX][hapmap]
rs9289053	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9857124	0.90[CEU][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap]
rs9875727	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9881385	0.93[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13316464	STXBP5L	cis	cerebellum	SCAN
rs13316464	GTF2E1	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116103000-116142000	Weak transcription	Fetal Lung	lung
2	chr3:116132400-116141800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:116134400-116142000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:116136200-116141600	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:116136200-116142000	Weak transcription	Brain Angular Gyrus	brain
6	chr3:116136400-116141800	Weak transcription	Brain Anterior Caudate	brain
7	chr3:116136400-116141800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:116136400-116141800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:116136400-116141800	Weak transcription	Brain Substantia Nigra	brain
10	chr3:116137800-116142000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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