Variant report

Variant	rs1920197
Chromosome Location	chr3:116140131-116140132
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13094055	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13316464	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1619451	0.82[EUR][1000 genomes]
rs16824908	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16824913	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1920175	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35192256	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35220064	0.83[EUR][1000 genomes]
rs9289053	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9875727	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9881385	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116103000-116142000	Weak transcription	Fetal Lung	lung
2	chr3:116132400-116141800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:116134400-116142000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:116136200-116141600	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:116136200-116142000	Weak transcription	Brain Angular Gyrus	brain
6	chr3:116136400-116141800	Weak transcription	Brain Anterior Caudate	brain
7	chr3:116136400-116141800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:116136400-116141800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:116136400-116141800	Weak transcription	Brain Substantia Nigra	brain
10	chr3:116137800-116142000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links