Variant report

Variant	rs71323440
Chromosome Location	chr3:116072052-116072053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:116065365..116068537-chr3:116070392..116072433,3	K562	blood:
2	chr3:116071165..116074760-chr3:116075305..116079110,5	K562	blood:

Variant related genes	Relation type
ENSG00000240922	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10212415	0.85[ASN][1000 genomes]
rs10212559	0.85[ASN][1000 genomes]
rs1030577	1.00[ASN][1000 genomes]
rs11924642	0.99[ASN][1000 genomes]
rs11928524	0.99[ASN][1000 genomes]
rs12695326	0.99[ASN][1000 genomes]
rs13068349	0.96[ASN][1000 genomes]
rs13069948	0.85[ASN][1000 genomes]
rs13070962	0.85[ASN][1000 genomes]
rs13073414	1.00[ASN][1000 genomes]
rs13077694	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13088599	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13323946	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1367770	0.99[ASN][1000 genomes]
rs1583183	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1731596	0.84[ASN][1000 genomes]
rs17647091	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1920183	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34642483	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35061171	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4271908	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4831096	0.85[ASN][1000 genomes]
rs4831133	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4831134	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4831136	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4831138	0.85[ASN][1000 genomes]
rs6438315	0.99[ASN][1000 genomes]
rs6775240	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6786130	0.96[ASN][1000 genomes]
rs71625206	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7619907	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7629472	0.86[ASN][1000 genomes]
rs7630011	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7634137	0.99[ASN][1000 genomes]
rs7637573	0.85[ASN][1000 genomes]
rs7652554	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7652923	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9289050	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9289051	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9823016	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9827984	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9833356	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9838534	0.86[ASN][1000 genomes]
rs9860105	0.85[ASN][1000 genomes]
rs9860236	0.87[ASN][1000 genomes]
rs9860260	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9861474	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9989972	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9990359	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116071400-116072800	Weak transcription	Colon Smooth Muscle	Colon

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