Variant report

Variant	rs13088599
Chromosome Location	chr3:116065672-116065673
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:116065365..116068537-chr3:116070392..116072433,3	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10212415	0.84[ASN][1000 genomes]
rs10212559	0.84[ASN][1000 genomes]
rs1030577	0.96[ASN][1000 genomes]
rs11924642	0.97[ASN][1000 genomes]
rs11928524	0.97[ASN][1000 genomes]
rs12695326	0.97[ASN][1000 genomes]
rs13068349	1.00[ASN][1000 genomes]
rs13069948	0.84[ASN][1000 genomes]
rs13070962	0.84[ASN][1000 genomes]
rs13073414	0.96[ASN][1000 genomes]
rs13077694	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13323946	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1367770	0.97[ASN][1000 genomes]
rs1583183	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1731596	0.82[ASN][1000 genomes]
rs17647091	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1920183	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34642483	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35061171	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4271908	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4831096	0.84[ASN][1000 genomes]
rs4831133	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4831134	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4831136	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4831138	0.84[ASN][1000 genomes]
rs6438315	0.97[ASN][1000 genomes]
rs6775240	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6786130	1.00[ASN][1000 genomes]
rs71323440	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71625206	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7619907	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7629472	0.85[ASN][1000 genomes]
rs7630011	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7634137	0.97[ASN][1000 genomes]
rs7637573	0.84[ASN][1000 genomes]
rs7652554	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7652923	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9289050	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9289051	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9823016	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9827984	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9833356	0.92[AFR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9838534	0.85[ASN][1000 genomes]
rs9860105	0.84[ASN][1000 genomes]
rs9860236	0.86[ASN][1000 genomes]
rs9860260	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9861474	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9989972	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9990359	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13088599	RNF152	trans	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116058800-116069000	Weak transcription	Brain Angular Gyrus	brain
2	chr3:116061800-116069000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr3:116062000-116066800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:116062000-116067000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:116062200-116066800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:116062400-116066800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:116063600-116070400	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:116063800-116066800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:116063800-116066800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:116064000-116066200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr3:116064000-116066800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr3:116064000-116069000	Weak transcription	Brain Anterior Caudate	brain
13	chr3:116064000-116069400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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