Variant report

Variant	rs1619655
Chromosome Location	chr3:116135671-116135672
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12491423	1.00[JPT][hapmap]
rs1541871	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17646258	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1835674	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1920185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1920189	0.89[EUR][1000 genomes]
rs1920191	0.86[YRI][hapmap]
rs2163504	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28504104	0.83[EUR][1000 genomes]
rs4521220	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6785974	0.92[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs724115	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7627104	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7648197	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9845203	1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs9852860	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9856796	0.93[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs988803	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116103000-116142000	Weak transcription	Fetal Lung	lung
2	chr3:116132400-116135800	Enhancers	Brain Cingulate Gyrus	brain
3	chr3:116132400-116136400	Enhancers	Brain Anterior Caudate	brain
4	chr3:116132400-116141800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:116133400-116136200	Enhancers	Brain Angular Gyrus	brain
6	chr3:116133400-116136200	Enhancers	Colon Smooth Muscle	Colon
7	chr3:116133600-116136200	Enhancers	Fetal Stomach	stomach
8	chr3:116133600-116136400	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr3:116134400-116142000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:116135000-116136000	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:116135000-116136600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:116135200-116136400	Enhancers	Brain Substantia Nigra	brain
13	chr3:116135600-116136200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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