Variant report

Variant	rs1073924
Chromosome Location	chr3:116089579-116089580
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10804523	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12488406	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12492517	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1367772	0.84[EUR][1000 genomes]
rs1920184	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1920186	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1920190	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2033406	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4831131	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6786250	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9823782	0.87[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9870357	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv437338	chr3:116076289-116110635	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2757005	chr3:116085678-116121948	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2759170	chr3:116085678-116121948	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116088600-116089600	Enhancers	Brain Hippocampus Middle	brain
2	chr3:116088800-116093400	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:116089000-116089600	Enhancers	Brain Anterior Caudate	brain
4	chr3:116089400-116089600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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