Variant report

Variant	rs1920362
Chromosome Location	chr3:115813235-115813236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1343647	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1920377	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4476499	1.00[AMR][1000 genomes]
rs56005976	0.85[AMR][1000 genomes]
rs56142426	0.85[AMR][1000 genomes]
rs58398368	0.85[AMR][1000 genomes]
rs59057906	1.00[AMR][1000 genomes]
rs73858507	0.85[AMR][1000 genomes]
rs73858510	0.85[AMR][1000 genomes]
rs73858512	0.85[AMR][1000 genomes]
rs9289035	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012260	chr3:115680931-115935968	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2756413	chr3:115721898-115908480	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2751975	chr3:115766285-115902901	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115780400-115830000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:115801200-115821400	Weak transcription	Fetal Lung	lung
3	chr3:115804600-115821200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:115810800-115823000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:115811000-115821000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:115811200-115813400	Enhancers	Liver	Liver
7	chr3:115813000-115813600	Enhancers	Brain Anterior Caudate	brain
8	chr3:115813200-115813400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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