Variant report

Variant	rs59057906
Chromosome Location	chr3:115887966-115887967
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1343647	1.00[AMR][1000 genomes]
rs1920362	1.00[AMR][1000 genomes]
rs1920377	1.00[AMR][1000 genomes]
rs4476499	1.00[AMR][1000 genomes]
rs56005976	0.85[AMR][1000 genomes]
rs56142426	0.85[AMR][1000 genomes]
rs58398368	0.85[AMR][1000 genomes]
rs73858507	0.85[AMR][1000 genomes]
rs73858510	0.85[AMR][1000 genomes]
rs73858512	0.85[AMR][1000 genomes]
rs9289035	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012260	chr3:115680931-115935968	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2756413	chr3:115721898-115908480	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2751975	chr3:115766285-115902901	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2755046	chr3:115818840-115942952	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv591345	chr3:115819376-115902901	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2752728	chr3:115833212-115902901	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2751976	chr3:115867310-115903310	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115881000-115889600	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:115881600-115891800	Weak transcription	Fetal Brain Male	brain
3	chr3:115885400-115888200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:115885400-115888400	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:115885400-115889400	Weak transcription	Brain Anterior Caudate	brain
6	chr3:115885400-115889600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:115886000-115888000	Enhancers	Brain Germinal Matrix	brain
8	chr3:115886600-115888200	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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