Variant report

Variant	rs1920704
Chromosome Location	chr12:62397060-62397061
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17125872	0.82[AFR][1000 genomes]
rs3910827	0.81[AFR][1000 genomes]
rs73312214	0.83[AFR][1000 genomes]
rs73312225	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315625	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62396600-62398400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr12:62396800-62397600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr12:62397000-62397200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links