Variant report

Variant	rs73315625
Chromosome Location	chr12:62498750-62498751
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17125872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1920704	0.82[AFR][1000 genomes]
rs3910827	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73312225	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62496600-62498800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:62497000-62499600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:62497600-62498800	Enhancers	H1 Cell Line	embryonic stem cell
4	chr12:62497600-62500200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr12:62497600-62500200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr12:62497600-62500200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr12:62497800-62500600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr12:62498000-62498800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr12:62498200-62498800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr12:62498200-62498800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr12:62498200-62500400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr12:62498400-62498800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr12:62498600-62498800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr12:62498600-62499000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr12:62498600-62499600	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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