Variant report

Variant	rs1923298
Chromosome Location	chr11:35384432-35384433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:35346814..35348373-chr11:35382181..35384573,2	MCF-7	breast:
2	chr11:35285409..35288039-chr11:35382924..35385141,2	MCF-7	breast:
3	chr11:35382673..35391138-chr11:35406916..35414742,25	MCF-7	breast:
4	chr11:35187046..35189640-chr11:35384110..35385949,2	MCF-7	breast:
5	chr11:35256103..35261501-chr11:35384186..35388588,8	MCF-7	breast:
6	chr11:35296358..35301253-chr11:35383072..35388147,10	MCF-7	breast:
7	chr11:35377674..35381317-chr11:35383998..35385696,3	MCF-7	breast:
8	chr11:35330316..35333880-chr11:35383154..35386545,4	MCF-7	breast:
9	chr11:35281817..35285244-chr11:35384315..35387489,3	MCF-7	breast:
10	chr11:35161963..35164830-chr11:35383993..35385550,2	MCF-7	breast:
11	chr11:35366512..35368832-chr11:35383993..35385771,3	MCF-7	breast:
12	chr11:35316042..35322702-chr11:35383885..35387953,7	MCF-7	breast:
13	chr11:35342453..35346425-chr11:35381907..35387258,7	MCF-7	breast:
14	chr11:35334087..35336895-chr11:35384207..35386170,2	MCF-7	breast:
15	chr11:35301697..35307899-chr11:35384037..35387970,7	MCF-7	breast:
16	chr11:35282553..35283239-chr11:35384041..35384849,3	MCF-7	breast:
17	chr11:35342676..35347000-chr11:35384036..35388623,5	MCF-7	breast:
18	chr11:35296807..35297598-chr11:35383959..35384853,2	MCF-7	breast:
19	chr11:35295515..35301483-chr11:35383053..35389477,19	MCF-7	breast:
20	chr11:34959758..34962115-chr11:35384391..35386520,2	MCF-7	breast:
21	chr11:35370405..35374305-chr11:35384183..35385741,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000110436	Chromatin interaction
ENSG00000255004	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10836379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10836384	0.84[MEX][hapmap]
rs11033096	0.93[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11033097	0.90[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11033098	0.87[ASW][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.82[ASN][1000 genomes]
rs11033099	0.84[MEX][hapmap]
rs7116961	0.84[MEX][hapmap]
rs7931664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv430372	chr11:35376124-35430324	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35367000-35385400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:35374400-35384600	Weak transcription	Psoas Muscle	Psoas
3	chr11:35374400-35384600	Weak transcription	Right Ventricle	heart
4	chr11:35376600-35385000	Weak transcription	HSMM	muscle
5	chr11:35377000-35384600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:35377000-35384600	Weak transcription	Right Atrium	heart
7	chr11:35377200-35384800	Weak transcription	Osteobl	bone
8	chr11:35379800-35384600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:35380400-35384800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr11:35381000-35384600	Weak transcription	Aorta	Aorta
11	chr11:35381200-35384600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr11:35381400-35384600	Weak transcription	Esophagus	oesophagus
13	chr11:35381600-35384600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:35381800-35384800	Weak transcription	HMEC	breast
15	chr11:35381800-35385400	Weak transcription	Fetal Brain Male	brain
16	chr11:35382000-35384600	Weak transcription	Brain Hippocampus Middle	brain
17	chr11:35382000-35384600	Weak transcription	Fetal Muscle Leg	muscle
18	chr11:35382000-35384600	Weak transcription	HSMMtube	muscle
19	chr11:35382000-35384800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:35382000-35384800	Weak transcription	Fetal Heart	heart
21	chr11:35382000-35385200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr11:35382000-35385400	Weak transcription	Fetal Brain Female	brain
23	chr11:35382200-35384600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr11:35382200-35385400	Weak transcription	Brain Anterior Caudate	brain
25	chr11:35382400-35385000	Weak transcription	Liver	Liver
26	chr11:35382800-35384800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr11:35383000-35387600	Enhancers	Pancreas	Pancrea
28	chr11:35383400-35385400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:35383400-35387000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:35383600-35385400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:35383800-35388200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:35384000-35386800	Enhancers	Adipose Nuclei	Adipose
33	chr11:35384200-35385200	Enhancers	Hela-S3	cervix
34	chr11:35384200-35385600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr11:35384400-35384800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:35384400-35385000	Flanking Active TSS	NHDF-Ad	bronchial
37	chr11:35384400-35385400	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr11:35384400-35385400	Weak transcription	HepG2	liver
39	chr11:35384400-35385800	Enhancers	Left Ventricle	heart
40	chr11:35384400-35385800	Flanking Active TSS	Stomach Smooth Muscle	stomach
41	chr11:35384400-35386000	Enhancers	Brain Angular Gyrus	brain
42	chr11:35384400-35386600	Enhancers	Colon Smooth Muscle	Colon
43	chr11:35384400-35386600	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr11:35384400-35386800	Enhancers	Rectal Smooth Muscle	rectum
45	chr11:35384400-35386800	Enhancers	NHLF	lung
46	chr11:35384400-35387000	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr11:35384400-35387000	Enhancers	Brain Cingulate Gyrus	brain

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