Variant report

Variant	rs192377216
Chromosome Location	chr15:42102649-42102650
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:42063685..42066999-chr15:42102378..42105267,3	MCF-7	breast:
2	chr15:42064035..42067811-chr15:42102222..42105290,4	K562	blood:
3	chr15:42102419..42105107-chr15:42118936..42121739,2	MCF-7	breast:
4	chr15:42064299..42065172-chr15:42102196..42103016,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-JMJD7-PLA2G4B-7	chr15:42101244-42102741	NONHSAT041962

Variant related genes	Relation type
ENSG00000260814	Chromatin interaction
ENSG00000137802	Chromatin interaction
ENSG00000243789	Chromatin interaction
ENSG00000250379	Chromatin interaction
ENSG00000168970	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	esv2757597	chr15:42047173-42122617	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2760027	chr15:42047173-42122617	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv904113	chr15:42050390-42118971	Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv904114	chr15:42050390-42119900	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv427958	chr15:42051317-42301283	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
7	nsv904115	chr15:42076387-42171483	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
8	nsv904116	chr15:42076387-42229852	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
9	nsv1038393	chr15:42083574-42188035	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
10	esv1827003	chr15:42087505-42199076	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
11	esv1816120	chr15:42093384-42171578	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
12	nsv1041645	chr15:42095168-42186482	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
13	nsv1051200	chr15:42095168-42188035	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
14	nsv517631	chr15:42096926-42187492	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
15	nsv1051733	chr15:42098896-42186482	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
16	nsv1036153	chr15:42098896-42188035	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
17	nsv1035998	chr15:42098896-42434254	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
18	nsv9243	chr15:42101625-42103990	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
19	nsv1048606	chr15:42101694-42192760	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42070200-42109800	Weak transcription	Fetal Brain Male	brain
2	chr15:42083600-42104600	Weak transcription	Liver	Liver
3	chr15:42083600-42109200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:42083800-42103200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr15:42083800-42103400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr15:42083800-42104400	Weak transcription	Colonic Mucosa	Colon
7	chr15:42083800-42105000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr15:42083800-42119400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:42088600-42103000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr15:42089400-42114800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:42090000-42109800	Weak transcription	Small Intestine	intestine
12	chr15:42091400-42105400	Weak transcription	HSMMtube	muscle
13	chr15:42092200-42109400	Weak transcription	HepG2	liver
14	chr15:42093200-42104800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr15:42093400-42104000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr15:42093600-42103200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr15:42093600-42103400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr15:42093600-42104200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr15:42093600-42104200	Weak transcription	Dnd41	blood
20	chr15:42093600-42105200	Weak transcription	Brain Germinal Matrix	brain
21	chr15:42093800-42103400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr15:42094200-42104400	Weak transcription	Fetal Lung	lung
23	chr15:42094200-42104600	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr15:42094600-42104400	Weak transcription	Fetal Brain Female	brain
25	chr15:42094800-42103200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr15:42095200-42104400	Weak transcription	GM12878-XiMat	blood
27	chr15:42097000-42103400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr15:42097000-42104200	Weak transcription	Aorta	Aorta
29	chr15:42097000-42104800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr15:42097200-42111000	Weak transcription	Fetal Kidney	kidney
31	chr15:42097400-42103000	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr15:42097400-42103400	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr15:42097600-42103400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr15:42097600-42103600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr15:42097600-42104200	Weak transcription	Thymus	Thymus
36	chr15:42097600-42104400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr15:42097600-42107800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr15:42097800-42119600	Weak transcription	Psoas Muscle	Psoas
39	chr15:42098000-42103000	Weak transcription	Brain Substantia Nigra	brain
40	chr15:42098000-42103200	Weak transcription	Brain Anterior Caudate	brain
41	chr15:42098000-42103800	Weak transcription	Fetal Muscle Leg	muscle
42	chr15:42098200-42104200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr15:42098200-42118800	Strong transcription	Fetal Stomach	stomach
44	chr15:42098600-42103600	Genic enhancers	NHEK	skin
45	chr15:42098800-42115600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr15:42099000-42103200	Weak transcription	Gastric	stomach
47	chr15:42099000-42103400	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr15:42099000-42103400	Weak transcription	Placenta	Placenta
49	chr15:42099000-42104200	Weak transcription	Lung	lung
50	chr15:42099000-42104600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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