Variant report

Variant	rs1924297
Chromosome Location	chr13:38178175-38178176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1333355	1.00[AMR][1000 genomes]
rs1333356	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1333357	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1333363	1.00[AMR][1000 genomes]
rs1413000	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1475245	1.00[AMR][1000 genomes]
rs1570610	1.00[AMR][1000 genomes]
rs1577008	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1924282	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1924284	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1924287	1.00[AMR][1000 genomes]
rs1924294	1.00[AMR][1000 genomes]
rs1924305	1.00[AMR][1000 genomes]
rs1924308	1.00[AMR][1000 genomes]
rs1981057	1.00[AMR][1000 genomes]
rs2031272	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs2031273	0.82[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2039434	1.00[YRI][hapmap]
rs2957213	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2985157	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2985158	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs2985166	1.00[AMR][1000 genomes]
rs2985171	1.00[AMR][1000 genomes]
rs2985172	1.00[AMR][1000 genomes]
rs4343144	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4418936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4480663	1.00[AMR][1000 genomes]
rs4595666	1.00[AMR][1000 genomes]
rs4943530	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs615491	1.00[AMR][1000 genomes]
rs6563568	1.00[AMR][1000 genomes]
rs662478	1.00[AMR][1000 genomes]
rs7329237	1.00[YRI][hapmap]
rs7334202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7989413	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7990804	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8002347	1.00[AMR][1000 genomes]
rs912386	1.00[AMR][1000 genomes]
rs9285117	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9547981	1.00[AMR][1000 genomes]
rs9547989	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs9547990	0.82[AFR][1000 genomes]
rs9548002	1.00[AMR][1000 genomes]
rs9548019	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs959269	1.00[AMR][1000 genomes]
rs9603229	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1045716	chr13:37952062-38394595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv832583	chr13:38030752-38202000	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38165800-38182400	Weak transcription	Placenta	Placenta
2	chr13:38176400-38180400	Weak transcription	Fetal Muscle Leg	muscle
3	chr13:38176800-38181800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr13:38177000-38183200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr13:38177000-38190400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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