Variant report

Variant	rs959269
Chromosome Location	chr13:38347594-38347595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:38346843..38348685-chr13:38354184..38356149,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1298657	1.00[AMR][1000 genomes]
rs1333355	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1333356	1.00[AMR][1000 genomes]
rs1333357	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1333363	1.00[AMR][1000 genomes]
rs1413000	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1415600	1.00[AMR][1000 genomes]
rs1475245	1.00[AMR][1000 genomes]
rs1538141	1.00[AMR][1000 genomes]
rs1538147	1.00[AMR][1000 genomes]
rs1538150	1.00[AMR][1000 genomes]
rs1538151	1.00[AMR][1000 genomes]
rs1570610	1.00[AMR][1000 genomes]
rs1577008	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1924282	1.00[AMR][1000 genomes]
rs1924284	1.00[AMR][1000 genomes]
rs1924287	1.00[AMR][1000 genomes]
rs1924294	1.00[AMR][1000 genomes]
rs1924297	1.00[AMR][1000 genomes]
rs1924305	1.00[AMR][1000 genomes]
rs1924308	1.00[AMR][1000 genomes]
rs1967896	0.87[AFR][1000 genomes]
rs1981057	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2031272	1.00[AMR][1000 genomes]
rs2031273	1.00[AMR][1000 genomes]
rs2039434	0.91[AFR][1000 genomes]
rs2957213	1.00[AMR][1000 genomes]
rs2985157	1.00[AMR][1000 genomes]
rs2985158	1.00[AMR][1000 genomes]
rs2985166	1.00[AMR][1000 genomes]
rs2985171	1.00[AMR][1000 genomes]
rs2985172	1.00[AMR][1000 genomes]
rs4343144	1.00[AMR][1000 genomes]
rs4418936	1.00[AMR][1000 genomes]
rs4480663	1.00[AMR][1000 genomes]
rs4485231	1.00[AMR][1000 genomes]
rs4595666	1.00[AMR][1000 genomes]
rs4943530	1.00[AMR][1000 genomes]
rs545636	1.00[AMR][1000 genomes]
rs615491	1.00[AMR][1000 genomes]
rs6563568	1.00[AMR][1000 genomes]
rs662478	1.00[AMR][1000 genomes]
rs669862	1.00[AMR][1000 genomes]
rs7334202	1.00[AMR][1000 genomes]
rs7984439	1.00[AMR][1000 genomes]
rs7989413	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7990804	1.00[AMR][1000 genomes]
rs8002347	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs817616	1.00[AMR][1000 genomes]
rs860144	1.00[AMR][1000 genomes]
rs912386	1.00[AMR][1000 genomes]
rs9285117	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9315519	1.00[AMR][1000 genomes]
rs9547981	1.00[AMR][1000 genomes]
rs9547989	1.00[AMR][1000 genomes]
rs9548002	1.00[AMR][1000 genomes]
rs9548019	1.00[AMR][1000 genomes]
rs9603229	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045716	chr13:37952062-38394595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2753974	chr13:38341331-38363450	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38341000-38349800	Weak transcription	Osteobl	bone
2	chr13:38342800-38349800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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