Variant report

Variant	rs545636
Chromosome Location	chr13:38418394-38418395
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1298657	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1333355	1.00[AMR][1000 genomes]
rs1333356	1.00[AMR][1000 genomes]
rs1333357	1.00[AMR][1000 genomes]
rs1333363	1.00[AMR][1000 genomes]
rs1413000	1.00[AMR][1000 genomes]
rs1415600	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1538141	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1538147	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1538150	1.00[AMR][1000 genomes]
rs1538151	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1570610	1.00[AMR][1000 genomes]
rs1577008	1.00[AMR][1000 genomes]
rs1924282	1.00[AMR][1000 genomes]
rs1924284	1.00[AMR][1000 genomes]
rs1924305	1.00[AMR][1000 genomes]
rs1924308	1.00[AMR][1000 genomes]
rs1933028	1.00[AMR][1000 genomes]
rs1981057	1.00[AMR][1000 genomes]
rs2780350	1.00[YRI][hapmap]
rs2957213	1.00[AMR][1000 genomes]
rs2985157	1.00[AMR][1000 genomes]
rs2985166	1.00[AMR][1000 genomes]
rs2985171	1.00[AMR][1000 genomes]
rs2985172	1.00[AMR][1000 genomes]
rs4343144	1.00[AMR][1000 genomes]
rs4485231	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4943530	1.00[AMR][1000 genomes]
rs615491	1.00[AMR][1000 genomes]
rs6563568	1.00[AMR][1000 genomes]
rs658545	0.84[AFR][1000 genomes]
rs662478	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs669862	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7984439	1.00[AMR][1000 genomes]
rs7989413	1.00[AMR][1000 genomes]
rs7990804	1.00[AMR][1000 genomes]
rs8002347	1.00[AMR][1000 genomes]
rs817616	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs817617	0.84[AFR][1000 genomes]
rs860144	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9285117	1.00[AMR][1000 genomes]
rs9315519	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9548002	1.00[AMR][1000 genomes]
rs9548019	1.00[AMR][1000 genomes]
rs959269	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv899995	chr13:38395847-38438843	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38402000-38418600	Weak transcription	Ovary	ovary
2	chr13:38403000-38421400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr13:38409600-38422600	Weak transcription	Osteobl	bone
4	chr13:38412600-38419800	Weak transcription	H1 Cell Line	embryonic stem cell

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