Variant report

Variant	rs1538150
Chromosome Location	chr13:38459574-38459575
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1298657	1.00[AMR][1000 genomes]
rs1333355	1.00[AMR][1000 genomes]
rs1333356	1.00[AMR][1000 genomes]
rs1333357	1.00[AMR][1000 genomes]
rs1333363	1.00[AMR][1000 genomes]
rs1413000	1.00[AMR][1000 genomes]
rs1415600	1.00[AMR][1000 genomes]
rs1538141	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1538147	1.00[AMR][1000 genomes]
rs1538151	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1577008	1.00[AMR][1000 genomes]
rs1933028	1.00[AMR][1000 genomes]
rs1981057	1.00[AMR][1000 genomes]
rs4485231	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs545636	1.00[AMR][1000 genomes]
rs615491	1.00[AMR][1000 genomes]
rs662478	1.00[AMR][1000 genomes]
rs669862	1.00[AMR][1000 genomes]
rs7984439	1.00[AMR][1000 genomes]
rs7989413	1.00[AMR][1000 genomes]
rs8002347	1.00[AMR][1000 genomes]
rs817616	1.00[AMR][1000 genomes]
rs860144	1.00[AMR][1000 genomes]
rs9285117	1.00[AMR][1000 genomes]
rs9315519	1.00[AMR][1000 genomes]
rs959269	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv983707	chr13:38456859-38460148	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv899996	chr13:38459224-38577056	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38444800-38462200	Weak transcription	Pancreas	Pancrea
2	chr13:38459200-38463000	Weak transcription	Osteobl	bone
3	chr13:38459400-38463400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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