Variant report

Variant	rs1967896
Chromosome Location	chr13:38322548-38322549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1333355	0.96[AFR][1000 genomes]
rs1333356	0.81[AFR][1000 genomes]
rs1333357	0.96[AFR][1000 genomes]
rs1413000	0.96[AFR][1000 genomes]
rs1577008	0.96[AFR][1000 genomes]
rs1981057	0.96[AFR][1000 genomes]
rs2039434	0.96[AFR][1000 genomes]
rs7989413	0.96[AFR][1000 genomes]
rs8002347	0.96[AFR][1000 genomes]
rs9285117	0.96[AFR][1000 genomes]
rs959269	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045716	chr13:37952062-38394595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv3406981	chr13:38322406-38322922	Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3497005	chr13:38322427-38322875	Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3497006	chr13:38322427-38322875	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38307600-38330800	Weak transcription	Ovary	ovary
2	chr13:38308200-38328200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr13:38316000-38328200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr13:38319000-38323000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:38320400-38330800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:38320800-38326400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr13:38321400-38325200	Weak transcription	Aorta	Aorta
8	chr13:38322000-38326400	Weak transcription	HSMMtube	muscle
9	chr13:38322200-38325800	Weak transcription	NHLF	lung
10	chr13:38322200-38326400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr13:38322400-38327800	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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