Variant report

Variant	rs1924613
Chromosome Location	chr13:52433008-52433009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1535577	1.00[EUR][1000 genomes]
rs2408529	0.88[AFR][1000 genomes]
rs4287464	0.82[AFR][1000 genomes]
rs481797	1.00[EUR][1000 genomes]
rs502641	1.00[EUR][1000 genomes]
rs57259213	1.00[EUR][1000 genomes]
rs57976507	1.00[EUR][1000 genomes]
rs59282183	1.00[EUR][1000 genomes]
rs7324468	1.00[EUR][1000 genomes]
rs7334073	0.89[AFR][1000 genomes]
rs73496048	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73496052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7986191	0.88[AFR][1000 genomes]
rs7987833	1.00[EUR][1000 genomes]
rs7989238	1.00[EUR][1000 genomes]
rs7993040	1.00[EUR][1000 genomes]
rs7993578	1.00[EUR][1000 genomes]
rs9596597	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9596601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530718	chr13:52291802-52832752	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv933424	chr13:52293482-52507732	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1044310	chr13:52321564-52643924	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1050117	chr13:52325116-52643924	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52430600-52436000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr13:52431000-52433400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr13:52432600-52433200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
4	chr13:52432600-52433800	Enhancers	HepG2	liver
5	chr13:52432800-52433400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr13:52432800-52433800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:52433000-52433200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr13:52433000-52433400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr13:52433000-52433400	Active TSS	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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