Variant report

Variant	rs4287464
Chromosome Location	chr13:52432312-52432313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1924613	0.82[AFR][1000 genomes]
rs2026127	0.95[EUR][1000 genomes]
rs2408529	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2408530	1.00[CEU][hapmap]
rs2408533	0.86[EUR][1000 genomes]
rs2408534	0.95[EUR][1000 genomes]
rs4245358	0.95[EUR][1000 genomes]
rs4245359	0.95[EUR][1000 genomes]
rs4245360	0.95[EUR][1000 genomes]
rs4245361	0.95[EUR][1000 genomes]
rs4245362	0.95[EUR][1000 genomes]
rs4245363	0.95[EUR][1000 genomes]
rs4297595	0.95[EUR][1000 genomes]
rs4386034	0.95[EUR][1000 genomes]
rs479752	0.95[EUR][1000 genomes]
rs4943031	0.85[EUR][1000 genomes]
rs4943032	0.95[EUR][1000 genomes]
rs4943035	0.95[EUR][1000 genomes]
rs527995	0.95[EUR][1000 genomes]
rs598957	0.85[EUR][1000 genomes]
rs684955	0.95[EUR][1000 genomes]
rs7333241	1.00[CEU][hapmap]
rs7334073	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7334251	0.85[EUR][1000 genomes]
rs7338350	0.95[EUR][1000 genomes]
rs74085835	0.95[EUR][1000 genomes]
rs7986191	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8002613	0.95[EUR][1000 genomes]
rs913899	0.95[EUR][1000 genomes]
rs928168	0.95[EUR][1000 genomes]
rs9535788	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530718	chr13:52291802-52832752	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv933424	chr13:52293482-52507732	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1044310	chr13:52321564-52643924	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1050117	chr13:52325116-52643924	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52420000-52432600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr13:52430600-52436000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:52430800-52432800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr13:52431000-52433400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr13:52431600-52432600	Weak transcription	HepG2	liver
6	chr13:52432200-52432400	Enhancers	A549	lung

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