Variant report

Variant	rs928168
Chromosome Location	chr13:52455530-52455531
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs2026127	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2408529	0.92[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs2408533	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2408534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4245358	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4245359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4245360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4245361	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4245362	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4245363	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4287464	0.95[EUR][1000 genomes]
rs4297595	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4386034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs479752	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4943031	0.89[EUR][1000 genomes]
rs4943032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4943035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs527995	1.00[EUR][1000 genomes]
rs598957	0.89[EUR][1000 genomes]
rs684955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7334073	0.95[EUR][1000 genomes]
rs7334251	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7338350	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74085835	1.00[EUR][1000 genomes]
rs7986191	0.91[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs8002613	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs913899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9535785	1.00[CEU][hapmap]
rs9535788	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530718	chr13:52291802-52832752	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv933424	chr13:52293482-52507732	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1044310	chr13:52321564-52643924	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1050117	chr13:52325116-52643924	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52433800-52479400	Weak transcription	HepG2	liver
2	chr13:52446200-52457000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr13:52448200-52457000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr13:52455000-52456000	Enhancers	K562	blood

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