Variant report

Variant	rs1925163
Chromosome Location	chr6:56127621-56127622
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10948981	0.82[CHD][hapmap]
rs12530020	0.82[CHD][hapmap]
rs13202214	0.81[LWK][hapmap]
rs13219390	0.82[LWK][hapmap]
rs1925158	0.82[CHD][hapmap]
rs2397212	0.82[CHD][hapmap]
rs4119562	0.82[CHD][hapmap]
rs4715602	0.82[CHD][hapmap]
rs4715603	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs6459142	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9370501	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9382597	0.94[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56120800-56129800	Weak transcription	Aorta	Aorta
2	chr6:56125000-56127800	Weak transcription	HSMM	muscle
3	chr6:56125000-56128200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:56127000-56130000	Enhancers	Fetal Stomach	stomach
5	chr6:56127200-56128400	Enhancers	Fetal Muscle Leg	muscle
6	chr6:56127600-56128400	Enhancers	Fetal Kidney	kidney
7	chr6:56127600-56129400	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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