Variant report

Variant	rs1926789
Chromosome Location	chr10:4359584-4359585
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10904228	0.99[ASN][1000 genomes]
rs10904229	0.97[ASN][1000 genomes]
rs11252461	0.99[ASN][1000 genomes]
rs11252462	0.99[ASN][1000 genomes]
rs12261707	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58217195	0.99[ASN][1000 genomes]
rs58966582	0.99[ASN][1000 genomes]
rs7898047	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1926789	DIP2C	cis	parietal	SCAN
rs1926789	FLJ45983	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4355800-4359800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:4357000-4360600	Enhancers	Fetal Lung	lung
3	chr10:4357600-4359600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:4358800-4359600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:4358800-4361600	Weak transcription	Ovary	ovary
6	chr10:4359000-4359800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:4359000-4362800	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:4359000-4373400	Weak transcription	Right Atrium	heart
9	chr10:4359200-4359600	Enhancers	HSMMtube	muscle
10	chr10:4359400-4359600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr10:4359400-4364600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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