Variant report

Variant	rs7898047
Chromosome Location	chr10:4354963-4354964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10904228	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10904229	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11252461	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11252462	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11813559	0.80[ASN][1000 genomes]
rs12261707	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17269099	0.82[ASN][1000 genomes]
rs17269169	0.82[ASN][1000 genomes]
rs1926789	0.94[ASN][1000 genomes]
rs58217195	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58966582	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4348200-4357200	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:4349400-4357800	Weak transcription	Ovary	ovary
3	chr10:4349400-4357800	Weak transcription	Psoas Muscle	Psoas
4	chr10:4350400-4355600	Weak transcription	Fetal Brain Male	brain
5	chr10:4350400-4355800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:4350400-4357200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:4350600-4355200	Weak transcription	Fetal Lung	lung
8	chr10:4350800-4358600	Weak transcription	Right Atrium	heart
9	chr10:4352800-4357400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr10:4352800-4357600	Weak transcription	Brain Germinal Matrix	brain
11	chr10:4353600-4358600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr10:4353800-4357400	Weak transcription	Fetal Heart	heart
13	chr10:4354400-4357600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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