Variant report

Variant	rs192684119
Chromosome Location	chrX:57148845-57148846
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chrX:57147235-57148899	SK-N-SH	brain:	n/a	n/a
2	IRF1	chrX:57148731-57148864	K562	blood:	n/a	n/a

Variant related genes	Relation type
SPIN2B	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3391838	chrX:57144560-57160412	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3347206	chrX:57147222-57159535	Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv33226	chrX:57148376-57160464	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57147200-57149000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chrX:57147200-57149000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chrX:57147200-57149000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chrX:57147200-57149000	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chrX:57147200-57149000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chrX:57147200-57149000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chrX:57147200-57149000	Active TSS	Primary T cells from cord blood	blood
8	chrX:57147200-57149000	Active TSS	Primary hematopoietic stem cells short term culture	blood
9	chrX:57147200-57149000	Active TSS	Muscle Satellite Cultured Cells	--
10	chrX:57147200-57149000	Active TSS	Cortex derived primary cultured neurospheres	brain
11	chrX:57147200-57149000	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chrX:57147200-57149200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chrX:57147200-57149200	Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chrX:57147200-57149200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chrX:57147200-57149200	Active TSS	Fetal Lung	lung
16	chrX:57147200-57149200	Active TSS	A549	lung
17	chrX:57147200-57149200	Active TSS	GM12878-XiMat	blood
18	chrX:57147200-57149200	Active TSS	HMEC	breast
19	chrX:57147200-57149200	Active TSS	K562	blood
20	chrX:57147200-57149400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chrX:57147200-57149400	Active TSS	HUES48 Cell Line	embryonic stem cell
22	chrX:57147200-57149400	Active TSS	HUES6 Cell Line	embryonic stem cell
23	chrX:57147200-57149400	Active TSS	HUES64 Cell Line	embryonic stem cell
24	chrX:57147200-57149400	Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chrX:57147200-57149400	Active TSS	Fetal Brain Female	brain
26	chrX:57147200-57149600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
27	chrX:57147400-57149000	Active TSS	Hela-S3	cervix
28	chrX:57147400-57149400	Active TSS	Primary hematopoietic stem cells	blood
29	chrX:57147600-57149200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chrX:57148600-57149000	Flanking Active TSS	HUVEC	blood vessel
31	chrX:57148600-57151000	Weak transcription	Primary B cells from peripheral blood	blood
32	chrX:57148600-57159200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chrX:57148800-57149200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chrX:57148800-57149200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chrX:57148800-57149200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chrX:57148800-57149200	Enhancers	Colon Smooth Muscle	Colon
37	chrX:57148800-57149400	Flanking Active TSS	Dnd41	blood
38	chrX:57148800-57153800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chrX:57148800-57155000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chrX:57148800-57156200	Weak transcription	HepG2	liver
41	chrX:57148800-57163200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chrX:57148800-57163600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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