Variant report

Variant	rs1927800
Chromosome Location	chr13:96910395-96910396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11841294	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12428610	0.81[AMR][1000 genomes]
rs1327631	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1327632	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1327634	0.80[AMR][1000 genomes]
rs1815354	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1925116	0.86[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs1925118	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1925121	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1927786	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1927788	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1927789	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1927792	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1927795	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1927796	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1927801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1927804	0.81[EUR][1000 genomes]
rs1927807	0.81[AMR][1000 genomes]
rs1927809	0.81[AMR][1000 genomes]
rs1930219	0.83[EUR][1000 genomes]
rs1930221	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1930222	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2149318	0.81[AMR][1000 genomes]
rs2182988	0.80[AMR][1000 genomes]
rs2389630	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4773942	0.80[AMR][1000 genomes]
rs4773944	0.80[AMR][1000 genomes]
rs4773948	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7331395	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7336212	0.95[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs764574	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7986153	0.98[ASN][1000 genomes]
rs7992274	0.80[AMR][1000 genomes]
rs7998759	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9302096	0.80[AMR][1000 genomes]
rs9302097	0.81[AMR][1000 genomes]
rs9302098	0.81[AMR][1000 genomes]
rs9513118	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9513119	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9516652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9516653	0.81[EUR][1000 genomes]
rs9525150	0.80[AMR][1000 genomes]
rs9525154	0.81[AMR][1000 genomes]
rs9525156	0.83[AMR][1000 genomes]
rs9525158	0.82[AMR][1000 genomes]
rs9525170	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9525171	0.83[EUR][1000 genomes]
rs9525173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9554335	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9562060	0.80[EUR][1000 genomes]
rs9590372	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050430	chr13:96508530-97020734	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541883	chr13:96508530-97020734	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1041165	chr13:96522021-96966520	Enhancers Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv869471	chr13:96622327-97223956	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv530390	chr13:96681439-97193029	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
6	nsv900936	chr13:96697209-97032483	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1136	chr13:96892691-96937795	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96907400-96918000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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