Variant report

Variant	rs1927836
Chromosome Location	chr13:29709309-29709310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1887746	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1927827	0.87[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2987338	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2987339	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2987340	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2987341	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3011451	0.85[ASN][1000 genomes]
rs3011461	0.85[CEU][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61701733	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6490357	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73166431	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7982169	0.87[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7993740	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7999371	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs928006	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9550441	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9550442	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9551604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9551609	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9551610	1.00[JPT][hapmap]
rs9551611	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9551614	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9551621	1.00[JPT][hapmap]
rs9551634	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv3406145	chr13:29616606-29917459	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1927836	C13orf26	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29701400-29712000	Weak transcription	Fetal Heart	heart
2	chr13:29706600-29711400	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links