Variant report

Variant	rs73166431
Chromosome Location	chr13:29711678-29711679
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1887746	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1927827	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1927836	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3011461	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61701733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6490357	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7982169	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7993740	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7999371	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs928006	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9551604	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv3406145	chr13:29616606-29917459	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29701400-29712000	Weak transcription	Fetal Heart	heart
2	chr13:29711200-29712400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:29711400-29712000	Weak transcription	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links