Variant report

Variant	rs1931759
Chromosome Location	chr6:38313180-38313181
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38310341..38313223-chr6:38315149..38317269,2	K562	blood:
2	chr6:38307277..38309097-chr6:38311796..38314497,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10484928	0.85[JPT][hapmap];0.92[MEX][hapmap]
rs16890577	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16890615	0.85[JPT][hapmap]
rs16890616	0.85[JPT][hapmap]
rs16890672	0.85[JPT][hapmap];0.85[MEX][hapmap]
rs4573069	0.87[CHD][hapmap]
rs4711534	0.86[CHD][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes]
rs4711535	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4711536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711537	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4714146	1.00[JPT][hapmap]
rs72851451	0.81[ASN][1000 genomes]
rs764348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs872234	0.86[CHD][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes]
rs9462410	1.00[CEU][hapmap]
rs9462429	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470862	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv885818	chr6:38147745-38436317	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv885820	chr6:38166511-38468887	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv602957	chr6:38305770-38395874	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38285000-38327800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:38291400-38317600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:38299200-38313400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:38299800-38317800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr6:38301600-38313400	Weak transcription	Psoas Muscle	Psoas
6	chr6:38301600-38315800	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:38301600-38324600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:38301800-38313400	Weak transcription	Aorta	Aorta
9	chr6:38302000-38315800	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr6:38302000-38318200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr6:38302200-38315800	Weak transcription	Brain Substantia Nigra	brain
12	chr6:38304600-38323000	Weak transcription	Ovary	ovary
13	chr6:38305000-38317600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr6:38305000-38318000	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:38305800-38315200	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr6:38306000-38313400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:38306000-38315800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr6:38306200-38314200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:38306200-38314400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:38306400-38313600	Weak transcription	HSMMtube	muscle
21	chr6:38306400-38314200	Weak transcription	HSMM	muscle
22	chr6:38306800-38313400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:38306800-38314400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:38307200-38314800	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr6:38307600-38318400	Weak transcription	Fetal Intestine Small	intestine
26	chr6:38307800-38315800	Weak transcription	Brain Anterior Caudate	brain
27	chr6:38308000-38314600	Weak transcription	Spleen	Spleen
28	chr6:38309000-38313400	Weak transcription	Fetal Muscle Leg	muscle
29	chr6:38309000-38318800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:38309000-38319000	Weak transcription	Esophagus	oesophagus
31	chr6:38309200-38313400	Weak transcription	Liver	Liver
32	chr6:38309400-38313200	Strong transcription	Primary B cells from peripheral blood	blood
33	chr6:38309600-38314000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:38309800-38313600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:38309800-38323400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr6:38310400-38313800	Strong transcription	Primary T cells from cord blood	blood
37	chr6:38310400-38314200	Weak transcription	HUVEC	blood vessel
38	chr6:38310600-38314000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr6:38310600-38314400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr6:38310800-38326000	Weak transcription	Lung	lung
41	chr6:38311200-38314200	Weak transcription	Gastric	stomach
42	chr6:38311200-38317600	Weak transcription	Adipose Nuclei	Adipose
43	chr6:38311400-38319000	Weak transcription	Left Ventricle	heart
44	chr6:38311400-38322000	Weak transcription	Primary B cells from cord blood	blood
45	chr6:38312000-38326600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr6:38313000-38315400	Enhancers	NHDF-Ad	bronchial

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