Variant report

Variant	rs9470862
Chromosome Location	chr6:38303221-38303222
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38302380..38305369-chr6:38307558..38309248,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16890577	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1931759	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711535	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4711536	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711537	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72851451	0.81[ASN][1000 genomes]
rs764348	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9462429	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv885818	chr6:38147745-38436317	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv885820	chr6:38166511-38468887	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38278000-38310600	Weak transcription	Gastric	stomach
2	chr6:38278400-38305400	Weak transcription	Pancreas	Pancrea
3	chr6:38283000-38304000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr6:38285000-38327800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:38288000-38305600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:38291000-38305400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:38291400-38317600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:38298600-38303600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:38299200-38313400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr6:38299800-38317800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:38300200-38304800	Weak transcription	Fetal Brain Female	brain
12	chr6:38301600-38305800	Weak transcription	HSMM	muscle
13	chr6:38301600-38306800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr6:38301600-38313400	Weak transcription	Psoas Muscle	Psoas
15	chr6:38301600-38315800	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:38301600-38324600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr6:38301800-38310400	Weak transcription	Primary B cells from cord blood	blood
18	chr6:38301800-38313400	Weak transcription	Aorta	Aorta
19	chr6:38302000-38310400	Weak transcription	Primary T cells from cord blood	blood
20	chr6:38302000-38315800	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr6:38302000-38318200	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr6:38302200-38315800	Weak transcription	Brain Substantia Nigra	brain
23	chr6:38303000-38304000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr6:38303000-38304800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links