Variant report

Variant	rs1932613
Chromosome Location	chr6:69651424-69651425
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10455223	0.87[CEU][hapmap]
rs10945146	0.89[CEU][hapmap]
rs12154054	0.88[CEU][hapmap];0.87[GIH][hapmap];1.00[MKK][hapmap]
rs12191480	1.00[MKK][hapmap]
rs12199028	0.88[CEU][hapmap];0.92[GIH][hapmap];0.85[MKK][hapmap];0.81[TSI][hapmap]
rs12200743	0.89[CEU][hapmap]
rs12202836	0.88[CEU][hapmap];0.87[GIH][hapmap];0.81[TSI][hapmap]
rs12209015	0.88[CEU][hapmap];0.92[GIH][hapmap];0.85[MKK][hapmap];0.81[TSI][hapmap]
rs17259872	0.88[CEU][hapmap]
rs17398479	1.00[CEU][hapmap]
rs17476556	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72903000	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72904926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72906723	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470831	chr6:69581991-69654650	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv886136	chr6:69598297-69654650	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv970302	chr6:69650881-69655471	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69644000-69653600	Weak transcription	Brain Substantia Nigra	brain
2	chr6:69644000-69653800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69644600-69665800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:69645200-69653600	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:69645200-69661200	Weak transcription	Left Ventricle	heart
6	chr6:69645600-69679000	Weak transcription	Fetal Brain Female	brain
7	chr6:69646000-69685000	Weak transcription	Fetal Lung	lung
8	chr6:69646200-69677200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:69647600-69659200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:69647600-69659200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:69647600-69677800	Weak transcription	Brain Anterior Caudate	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links