Variant report

Variant	rs12209015
Chromosome Location	chr6:69598003-69598004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10455223	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10945146	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12154054	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12191480	0.85[MKK][hapmap]
rs12194110	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12198700	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12199028	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12200743	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12202836	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12208199	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17259872	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17398479	0.87[CEU][hapmap]
rs17476556	0.88[CEU][hapmap]
rs1932608	0.82[CEU][hapmap];0.82[GIH][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes]
rs1932613	0.88[CEU][hapmap];0.92[GIH][hapmap];0.85[MKK][hapmap];0.81[TSI][hapmap]
rs72902918	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72902944	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72903000	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv886133	chr6:69549897-69610281	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv886134	chr6:69571053-69605682	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886135	chr6:69571053-69606748	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv528106	chr6:69581991-69610281	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv470831	chr6:69581991-69654650	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2758060	chr6:69595492-69598351	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2759440	chr6:69595492-69598351	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69590600-69600600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:69591600-69602400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:69592800-69600000	Weak transcription	Fetal Lung	lung
4	chr6:69594000-69600800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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