Variant report

Variant	rs1932608
Chromosome Location	chr6:69603936-69603937
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10455223	0.80[CEU][hapmap];0.90[EUR][1000 genomes]
rs10485435	0.81[LWK][hapmap];0.97[MKK][hapmap];0.90[YRI][hapmap]
rs10945146	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs11961186	0.89[YRI][hapmap]
rs12154054	0.82[CEU][hapmap];0.89[MEX][hapmap];0.80[TSI][hapmap];0.90[EUR][1000 genomes]
rs12194110	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12198700	0.88[EUR][1000 genomes]
rs12199028	0.82[CEU][hapmap];0.82[GIH][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes]
rs12200743	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs12202836	0.82[CEU][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes]
rs12208199	0.82[EUR][1000 genomes]
rs12209015	0.82[CEU][hapmap];0.82[GIH][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes]
rs17259872	0.81[CEU][hapmap];0.88[EUR][1000 genomes]
rs56196962	0.82[AFR][1000 genomes]
rs72902918	0.87[EUR][1000 genomes]
rs72902944	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv886133	chr6:69549897-69610281	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv886134	chr6:69571053-69605682	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886135	chr6:69571053-69606748	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv528106	chr6:69581991-69610281	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv470831	chr6:69581991-69654650	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv886136	chr6:69598297-69654650	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69601200-69609400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:69601600-69610200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69602000-69604200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:69602800-69621000	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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