Variant report

Variant	rs72902944
Chromosome Location	chr6:69574226-69574227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10455223	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10945146	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12154054	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12194110	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12198700	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12199028	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12200743	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12202836	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12208199	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12209015	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17259872	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1932608	0.88[EUR][1000 genomes]
rs72902918	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72903000	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv886133	chr6:69549897-69610281	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1020792	chr6:69555181-69578740	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1025548	chr6:69555181-69589956	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv886134	chr6:69571053-69605682	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv886135	chr6:69571053-69606748	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69569600-69575400	Weak transcription	Fetal Lung	lung
2	chr6:69569800-69574600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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