Variant report

Variant	rs12208199
Chromosome Location	chr6:69535080-69535081
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10455223	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10945146	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12154054	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12194110	0.91[EUR][1000 genomes]
rs12198700	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12199028	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12200743	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12202836	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12209015	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17259872	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1932608	0.82[EUR][1000 genomes]
rs72902918	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72902944	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886131	chr6:69480628-69545903	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69505600-69536000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:69523400-69535200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69528400-69536200	Weak transcription	Brain Angular Gyrus	brain
4	chr6:69532800-69548000	Weak transcription	Fetal Lung	lung
5	chr6:69534600-69535400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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